Yes, believe it or not I discovered yet another problem. Once all the new mounts were in place I began to do a rough alignment of the motor to the shaft, cutlass & shaft log.
For some reason the I could get close but she just kept popping back out of alignment no matter how I moved the engine. After 20 minutes of mucking with her I realized why the engine was so low to begin with. A previous owner had replaced the exhaust elbow, a whole other set of problems, and made the nipple between the manifold and the exhaust elbow to darn long.
To correct for this mishap they Mickey Moused it by simply lowering the engine so the exhaust outlet cleared the bulkhead. This fixed the exhaust issue but caused many more as you'll see below.